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SBMLtoODEjax

  • 🏡 Home

Getting Started

  • 🛠️ Installation
  • 👀 Why SBMLtoODEjax?
  • 🎨 Design Principles
  • 🤝 Contributing
  • 📎 Jax 101 [external]

🎓 Tutorials

  • Numerical simulation
  • Parallel execution
  • Benchmarking
  • Gradient descent

Public API - sbmltoodejax package

  • sbmltoodejax.parse
  • sbmltoodejax.modulegeneration
  • sbmltoodejax.jaxfuncs
  • sbmltoodejax.biomodels_api
  • sbmltoodejax.utils

Index

C | D | G | L | M | P | S

C

  • cot() (in module sbmltoodejax.jaxfuncs)
  • coth() (in module sbmltoodejax.jaxfuncs)
  • csc() (in module sbmltoodejax.jaxfuncs)
  • csch() (in module sbmltoodejax.jaxfuncs)

D

  • download_from() (in module sbmltoodejax.biomodels_api)
  • download_json() (in module sbmltoodejax.biomodels_api)

G

  • generate_biomodel() (in module sbmltoodejax.utils)
  • GenerateModel() (in module sbmltoodejax.modulegeneration)
  • get_content_for_model() (in module sbmltoodejax.biomodels_api)
  • get_files_for_model() (in module sbmltoodejax.biomodels_api)
  • get_model_info() (in module sbmltoodejax.biomodels_api)

L

  • load_biomodel() (in module sbmltoodejax.utils)

M

  • module
    • sbmltoodejax.biomodels_api
    • sbmltoodejax.jaxfuncs
    • sbmltoodejax.modulegeneration
    • sbmltoodejax.parse
    • sbmltoodejax.utils

P

  • ParseSBMLFile() (in module sbmltoodejax.parse)
  • piecewise() (in module sbmltoodejax.jaxfuncs)

S

  • sbmltoodejax.biomodels_api
    • module
  • sbmltoodejax.jaxfuncs
    • module
  • sbmltoodejax.modulegeneration
    • module
  • sbmltoodejax.parse
    • module
  • sbmltoodejax.utils
    • module
  • search_for_model() (in module sbmltoodejax.biomodels_api)
  • sec() (in module sbmltoodejax.jaxfuncs)
  • sech() (in module sbmltoodejax.jaxfuncs)
  • sigmoid() (in module sbmltoodejax.jaxfuncs)

By Mayalen Etcheverry

© Copyright 2023, Mayalen Etcheverry.